EV Barcode: A Machine Learning Driven Web Resource for Predicting the Cellular Origin of Extracellular Vesicles from Omics Cargo
Journal of Extracellular Vesicles. Accepted.
Publications
Peer reviewed articles, scientific resources, software and scholarly chapters. * denotes co first authorship.
First-author and co-first-author publications
Bioinformatics tools and databases for extracellular vesicles and particles research
In: Extracellular Vesicles. Springer US; pp. 361–377.
ExoCarta 2024: A Web-based Repository of Small Extracellular Vesicles Cargo
Journal of Molecular Biology. 437(15):169218.
Vesiclepedia 2024: an extracellular vesicles and extracellular particles repository
Nucleic Acids Research. 52(D1):D1694–D1698. *Co-first authors.
Pep2Graph: A standalone tool to analyse proteolytic cleavages by proteases from gel-based mass spectrometry data
Proteomics. 22(22):e2200147.
Co-author publications
Efferocytosis of apoptotic bodies drives SARS-CoV-2 infection and macrophage inflammation
Nature Communications. 17(1):7535.
TMEM16F is an important regulator of cancer cell-derived extracellular vesicle secretion and function
Journal of Extracellular Vesicles. Accepted.
Extracellular vesicles enabling moonlighting proteins
In: Cryptic Enzymes and Moonlighting Proteins. Elsevier.
Proteomics analysis of C2C12 myotubes treated with atrophy-inducing cancer cell-derived factors
Proteomics. 24(11):e2300020.
Submitted, in review, rebuttal and in preparation
The protective effect of exercise on breast cancer progression is mediated by extracellular vesicles
Rebuttal stage
Pulsed priming with the FAK inhibitor narmafotinib enhances chemotherapy response in pancreatic cancer
In review
Apoptotic bodies from patients with Sjögren’s disease drive atypical memory B-cell and macrophage activation
In review
An omics-based approach to elucidate EV biogenesis and secretion genes in cancer progression
In preparation
Physical coherence and network analysis reveal ubiquitin ligase NEDD4 as a regulator of extracellular-vesicle biogenesis
In preparation
Tumour extracellular vesicles CNTN1 promote cancer-associated cachexia through Notch signalling
In preparation
Caspases 3 and 7 regulate basal extracellular-vesicle biogenesis through degradation of proteasomal subunits
In preparation
Proteomics analysis of 3T3-L1 adipocytes treated with atrophy-inducing cancer-cell-derived factors
In preparation
Dietary and probiotic extracellular vesicles from milk and yogurt regulate cancer progression upon oral administration
In preparation