Gummadi S, Chitti SV, Kang T, Petrovska M, Mathivanan S, Fonseka P.
Sriram Gummadi
Bioinformatics Researcher · Computational Biologist · Cancer Genomics & Data Science
I’m a PhD researcher at La Trobe University, Melbourne, specialising in bioinformatics, computational biology and machine learning. My work focuses on using computational approaches to understand complex biological systems and advance biomedical discovery.
My research spans extracellular vesicle biology, proteomics, biomedical databases and machine learning. You can find more about my research in my Resume and Publications.
Beyond my doctoral research, I enjoy analysing publicly available biomedical datasets using computational and statistical methods. Some of this work is available in my Projects.
Publications
Gummadi S, Chitti SV, Mathivanan S, Shahi S, Fonseka P.
Bioinformatics tools and databases for extracellular vesicles and particles research
In: Extracellular Vesicles. Springer US; pp. 361–377.Gummadi S, Chitti SV, Kang T, Shahi S, Mathivanan S, Fonseka P.
ExoCarta 2024: A Web-based Repository of Small Extracellular Vesicles Cargo
Journal of Molecular Biology. 437(15):169218.Chitti SV*, Gummadi S*, Kang T, Shahi S, Fonseka P, Mathivanan S.
Vesiclepedia 2024: an extracellular vesicles and extracellular particles repository
Nucleic Acids Research. 52(D1):D1694–D1698. *Co-first authors.Gummadi S, Kang T, Fonseka P, Chitti SV, Ang CS, Mathivanan S.
Pep2Graph: A standalone tool to analyse proteolytic cleavages by proteases from gel-based mass spectrometry data
Proteomics. 22(22):e2200147.Projects
Technical skills
Technical and Programming
Python · R · Linux · Web Server Development · Bioinformatics Pipeline Development · Workflow Automation
Bioinformatics and Computational Biology
Bioinformatics · Computational Biology · Genomics · Transcriptomics · Proteomics · Metagenomics · Spatial Biology · Multi-Omics Integration
Data Science and Artificial Intelligence
Machine Learning · Explainable AI · Predictive Modelling · Biostatistics · Statistical Modelling · Survival Analysis
Cancer and Translational Research
Cancer Biology · Biomarker Discovery · Drug Discovery
Scientific Research and Communication
Research Collaboration · Manuscript Writing · Scientific Publications · Scientific Data Visualisation